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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14135-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG14135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:11685199-11686434 (+) // 100.0 //
Probeset : 1631886_at
Accessions : protein= NP_648495;, nucleotide= NM_140238;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 13 of 4 1.40Up
Head14 ± 13 of 4 1.00None
Eye24 ± 04 of 4 1.82Up
Thoracicoabdominal ganglion14 ± 11 of 4 1.10None
Salivary gland30 ± 54 of 4 2.22None
Crop12 ± 21 of 4 0.90None
Midgut4 ± 20 of 4 0.40Down
Tubule14 ± 10 of 4 1.00None
Hindgut12 ± 10 of 4 0.90None
Heart18 ± 34 of 4 1.35None
Fat body12 ± 31 of 4 0.95None
Ovary14 ± 02 of 4 1.10None
Testis3 ± 00 of 4 0.20Down
Male accessory glands14 ± 11 of 4 1.00None
Virgin spermatheca9 ± 22 of 4 0.72None
Mated spermatheca15 ± 13 of 4 1.13None
Adult carcass13 ± 40 of 4 1.00None
Larval CNS17 ± 53 of 4 1.29None
Larval Salivary gland8 ± 20 of 4 0.62None
Larval midgut3 ± 10 of 4 0.26Down
Larval tubule19 ± 12 of 4 1.50Up
Larval hindgut11 ± 21 of 4 0.84None
Larval fat body6 ± 30 of 4 0.50None
Larval trachea16 ± 24 of 4 1.24None
Larval carcass8 ± 11 of 4 0.63None
S2 cells (growing)5 ± 00 of 4 0.42Down
Whole fly13 ± 11 of 4

Looking for CG14135-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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