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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14141-RA through 18771 annotations produced 1 hits



(CG14141):

Annotation Number : CG14141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036146
Gbrowse : chr3L:11194405-11195250 (+) // 100.0 //
Probeset : 1641102_at
Accessions : protein= NP_648450;, nucleotide= NM_140193;
FlyMine data for FBgn0036146.
BDGP gene expression has embryonic in situ data for CG14141: 4 pix of staining in 1 body parts.
BioGrid reports that CG14141 interacts with CG16747 .
VDRC has 2 RNAi stocks for FBgn0036146 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1480 ± 454 of 466.40Up
Head555 ± 94 of 424.90Up
Eye117 ± 34 of 4 5.26Up
Thoracicoabdominal ganglion1596 ± 554 of 471.60Up
Salivary gland14 ± 40 of 4 0.65None
Crop6 ± 11 of 4 0.30Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.20Down
Heart9 ± 12 of 4 0.41Down
Fat body8 ± 31 of 4 0.37Down
Ovary1 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands8 ± 20 of 4 0.40Down
Virgin spermatheca6 ± 02 of 4 0.31Down
Mated spermatheca5 ± 10 of 4 0.25Down
Adult carcass15 ± 42 of 4 0.70None
Larval CNS343 ± 314 of 415.42Up
Larval Salivary gland6 ± 10 of 4 0.29Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule7 ± 03 of 4 0.30Down
Larval hindgut15 ± 34 of 4 0.68None
Larval fat body8 ± 11 of 4 0.40Down
Larval trachea4 ± 30 of 4 0.19Down
Larval carcass6 ± 10 of 4 0.27Down
S2 cells (growing)18 ± 14 of 4 0.84None
Whole fly22 ± 14 of 4

Looking for CG14141-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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