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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1416-RA through 18771 annotations produced 1 hits



(CG1416):

Annotation Number : CG1416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032961
Gbrowse : chr2L:21758001-21760915 (+) // 100.0 //
Probeset : 1641168_s_at
Accessions : protein= NP_610121; /// NP_724361; /// NP_724362;, nucleotide= NM_136277; /// NM_165398; /// NM_165399;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0001671 // ATPase activator activity // inferred from electronic annotation /// 0051087 // chaperone binding // inferred
FlyMine data for FBgn0032961.
BDGP gene expression has embryonic in situ data for CG1416: 19 pix of staining in 12 body parts.
BioGrid reports that CG1416 interacts with CG32096 .
TRiP has 1 RNAi stocks for FBgn0032961 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032961 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain401 ± 24 of 4 0.70Down
Head375 ± 94 of 4 0.60Down
Eye660 ± 524 of 4 1.09None
Thoracicoabdominal ganglion420 ± 104 of 4 0.70Down
Salivary gland393 ± 174 of 4 0.65Down
Crop576 ± 244 of 4 1.00None
Midgut289 ± 84 of 4 0.50Down
Tubule479 ± 174 of 4 0.80Down
Hindgut399 ± 84 of 4 0.70Down
Heart941 ± 504 of 4 1.55Up
Fat body828 ± 334 of 4 1.37Up
Ovary814 ± 64 of 4 1.30Up
Testis370 ± 94 of 4 0.60Down
Male accessory glands682 ± 254 of 4 1.10None
Virgin spermatheca847 ± 684 of 4 1.40Up
Mated spermatheca1122 ± 884 of 4 1.85Up
Adult carcass499 ± 194 of 4 0.80Down
Larval CNS888 ± 584 of 4 1.47Up
Larval Salivary gland1055 ± 264 of 4 1.74Up
Larval midgut285 ± 214 of 4 0.47Down
Larval tubule321 ± 24 of 4 0.50Down
Larval hindgut666 ± 604 of 4 1.10None
Larval fat body339 ± 214 of 4 0.60Down
Larval trachea843 ± 1284 of 4 1.39Up
Larval carcass809 ± 394 of 4 1.34Up
S2 cells (growing)1106 ± 554 of 4 1.83Up
Whole fly605 ± 284 of 4

Looking for CG1416-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime