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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14181-RA through 18771 annotations produced 1 hits



Use1 (Use1):

Annotation Number : CG14181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035965
Gbrowse : chr3L:9129305-9130203 (-) // 100.0 //
Probeset : 1624014_at
Accessions : protein= NP_648289;, nucleotide= NM_140032;
Pathway : Golgi to ER // inferred from sequence or structural similarity /// 0007030 // Golgi organization // inferred from mutan
Interpro : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
FlyMine data for FBgn0035965.
VDRC has 3 RNAi stocks for FBgn0035965 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 44 of 4 0.70Down
Head46 54 of 4 0.70Down
Eye62 24 of 4 0.89None
Thoracicoabdominal ganglion41 44 of 4 0.60Down
Salivary gland170 74 of 4 2.42Up
Crop71 54 of 4 1.00None
Midgut50 34 of 4 0.70Down
Tubule41 04 of 4 0.60Down
Hindgut50 34 of 4 0.70Down
Heart35 34 of 4 0.51Down
Fat body38 93 of 4 0.54Down
Ovary112 34 of 4 1.60Up
Testis60 44 of 4 0.90None
Male accessory glands159 104 of 4 2.30Up
Virgin spermatheca29 24 of 4 0.42Down
Mated spermatheca43 44 of 4 0.62Down
Adult carcass33 41 of 4 0.50Down
Larval CNS70 54 of 4 1.00None
Larval Salivary gland167 94 of 4 2.37Up
Larval midgut54 24 of 4 0.77Down
Larval tubule69 34 of 4 1.00None
Larval hindgut60 14 of 4 0.86None
Larval fat body63 34 of 4 0.90None
Larval trachea61 54 of 4 0.88None
Larval carcass48 24 of 4 0.69Down
S2 cells (growing)81 54 of 4 1.16None
Whole fly70 44 of 4

Looking for CG14181-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime