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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14185-RA through 18771 annotations produced 1 hits



(CG14185):

Annotation Number : CG14185
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036936
Gbrowse : chr3L:20099220-20100496 (+) // 100.0 //
Probeset : 1627755_at
Accessions : protein= NP_649175;, nucleotide= NM_140918;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0036936.
VDRC has 1 RNAi stocks for FBgn0036936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.70None
Head15 ± 22 of 4 1.30None
Eye8 ± 21 of 4 0.70None
Thoracicoabdominal ganglion8 ± 10 of 4 0.70None
Salivary gland4 ± 10 of 4 0.39None
Crop13 ± 11 of 4 1.10None
Midgut10 ± 10 of 4 0.80None
Tubule7 ± 00 of 4 0.60Down
Hindgut7 ± 01 of 4 0.60None
Heart6 ± 20 of 4 0.52None
Fat body16 ± 20 of 4 1.36None
Ovary7 ± 01 of 4 0.60None
Testis3 ± 20 of 4 0.30None
Male accessory glands12 ± 40 of 4 1.00None
Virgin spermatheca8 ± 10 of 4 0.71None
Mated spermatheca12 ± 40 of 4 1.01None
Adult carcass9 ± 40 of 4 0.80None
Larval CNS10 ± 20 of 4 0.86None
Larval Salivary gland15 ± 11 of 4 1.25None
Larval midgut14 ± 00 of 4 1.18None
Larval tubule9 ± 20 of 4 0.80None
Larval hindgut11 ± 10 of 4 0.97None
Larval fat body13 ± 20 of 4 1.10None
Larval trachea8 ± 20 of 4 0.69None
Larval carcass10 ± 00 of 4 0.85None
S2 cells (growing)8 ± 10 of 4 0.68None
Whole fly12 ± 30 of 4

Looking for CG14185-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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