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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14207-RA through 18771 annotations produced 1 hits

small heat shock protein hsp20 family (HspB8):

Annotation Number : CG14207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031037
Gbrowse : chrX:19499190-19505226 (+) // 100.0 //
Probeset : 1633483_a_at
Accessions : protein= NP_608326; /// NP_728275;, nucleotide= NM_134482; /// NM_167669;
Pathway : 0030018 // Z disc // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031037.
BDGP gene expression has embryonic in situ data for CG14207: 40 pix of staining in 10 body parts.
Homophila reports that CG14207 is a close match (1e-12) to human gene CRYA2;CRYAB;CTPP2 (NP_001876), a gene associated with Cataract, posterior polar 2 (3);Myopathy, cardioskeletal, desmin-related, with cataract, 608810 (3).
BioGrid reports that CG14207 interacts with CG14359 CG2715 CG32130 CG3510 CG3798 CG4237 CG5119 CG7109 CG8597 CG8893 CG31034 CG31362 CG7744 CG8457 CG5740 .
VDRC has 3 RNAi stocks for FBgn0031037 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain395 144 of 4 0.80Down
Head712 504 of 4 1.40Up
Eye300 74 of 4 0.60Down
Thoracicoabdominal ganglion614 64 of 4 1.20Up
Salivary gland289 24 of 4 0.58Down
Crop3418 1334 of 4 6.80Up
Midgut331 34 of 4 0.70Down
Tubule419 264 of 4 0.80Down
Hindgut2342 494 of 4 4.70Up
Heart994 784 of 4 1.99Up
Fat body400 264 of 4 0.80Down
Ovary329 74 of 4 0.70Down
Testis116 34 of 4 0.20Down
Male accessory glands232 94 of 4 0.50Down
Virgin spermatheca479 304 of 4 0.96None
Mated spermatheca649 334 of 4 1.30Up
Adult carcass1223 724 of 4 2.40Up
Larval CNS573 304 of 4 1.14Up
Larval Salivary gland1381 1024 of 4 2.76Up
Larval midgut416 124 of 4 0.83Down
Larval tubule874 134 of 4 1.70Up
Larval hindgut2076 654 of 4 4.14Up
Larval fat body2108 1934 of 4 4.20Up
Larval trachea891 814 of 4 1.78Up
Larval carcass3888 1724 of 4 7.76Up
S2 cells (growing)503 114 of 4 1.00None
Whole fly501 144 of 4

Looking for CG14207-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime