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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14213-RB through 18771 annotations produced 1 hits



(CG14213):

Annotation Number : CG14213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031047
Gbrowse : chrX:19532912-19534784 (+) // 100.0 //
Probeset : 1631578_s_at
Accessions : protein= NP_608335; /// NP_728284;, nucleotide= NM_134491; /// NM_167675;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031047.
BDGP gene expression has embryonic in situ data for CG14213: 4 pix of staining in 1 body parts.
BioGrid reports that CG14213 interacts with CG8841 .
VDRC has 3 RNAi stocks for FBgn0031047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 ± 54 of 4 1.30Up
Head132 ± 64 of 4 0.70Down
Eye222 ± 24 of 4 1.17Up
Thoracicoabdominal ganglion194 ± 104 of 4 1.00None
Salivary gland141 ± 54 of 4 0.75Down
Crop138 ± 54 of 4 0.70Down
Midgut90 ± 44 of 4 0.50Down
Tubule176 ± 64 of 4 0.90Down
Hindgut129 ± 44 of 4 0.70Down
Heart100 ± 64 of 4 0.53Down
Fat body78 ± 74 of 4 0.41Down
Ovary280 ± 34 of 4 1.50Up
Testis305 ± 234 of 4 1.60Up
Male accessory glands184 ± 64 of 4 1.00None
Virgin spermatheca104 ± 64 of 4 0.55Down
Mated spermatheca141 ± 24 of 4 0.75Down
Adult carcass137 ± 84 of 4 0.70Down
Larval CNS344 ± 474 of 4 1.82Up
Larval Salivary gland127 ± 104 of 4 0.67Down
Larval midgut70 ± 44 of 4 0.37Down
Larval tubule112 ± 84 of 4 0.60Down
Larval hindgut96 ± 24 of 4 0.51Down
Larval fat body125 ± 84 of 4 0.70Down
Larval trachea177 ± 114 of 4 0.94None
Larval carcass142 ± 114 of 4 0.75Down
S2 cells (growing)265 ± 54 of 4 1.40Up
Whole fly189 ± 94 of 4

Looking for CG14213-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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