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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14220-RA through 18771 annotations produced 1 hits



(CG14220):

Annotation Number : CG14220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031036
Gbrowse : chrX:19494340-19495883 (-) // 100.0 //
Probeset : 1636388_at
Accessions : protein= NP_608325;, nucleotide= NM_134481;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031036.
BioGrid reports that CG14220 interacts with CG2446 CG31224 CG17604 CG8831 .
VDRC has 1 RNAi stocks for FBgn0031036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 04 of 4 0.80None
Head29 ± 14 of 4 0.50Down
Eye40 ± 34 of 4 0.64Down
Thoracicoabdominal ganglion41 ± 14 of 4 0.60Down
Salivary gland60 ± 44 of 4 0.94None
Crop59 ± 44 of 4 0.90None
Midgut39 ± 22 of 4 0.60Down
Tubule36 ± 34 of 4 0.60Down
Hindgut33 ± 34 of 4 0.50Down
Heart30 ± 24 of 4 0.48Down
Fat body20 ± 30 of 4 0.31Down
Ovary157 ± 54 of 4 2.40Up
Testis32 ± 04 of 4 0.50Down
Male accessory glands69 ± 24 of 4 1.10None
Virgin spermatheca30 ± 24 of 4 0.47Down
Mated spermatheca33 ± 24 of 4 0.51Down
Adult carcass33 ± 23 of 4 0.50Down
Larval CNS80 ± 44 of 4 1.25Up
Larval Salivary gland74 ± 24 of 4 1.15None
Larval midgut28 ± 31 of 4 0.43Down
Larval tubule47 ± 14 of 4 0.70Down
Larval hindgut35 ± 24 of 4 0.54Down
Larval fat body34 ± 33 of 4 0.50Down
Larval trachea58 ± 84 of 4 0.91None
Larval carcass35 ± 04 of 4 0.55Down
S2 cells (growing)63 ± 24 of 4 0.99None
Whole fly64 ± 34 of 4

Looking for CG14220-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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