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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14224-RA through 18771 annotations produced 1 hits



CG14224 (Ubqn):

Annotation Number : CG14224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031057
Gbrowse : chrX:19577780-19581273 (+) // 99.84 //
Probeset : 1638581_at
Accessions : protein= NP_608344;, nucleotide= NM_134500;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031057.
BDGP gene expression has embryonic in situ data for CG14224: 4 pix of staining in 1 body parts.
BioGrid reports that CG14224 interacts with CG15884 CG31508 CG7021 CG14243 CG15459 CG15757 CG2171 CG3938 CG5468 CG5717 CG7425 CG9048 CG9184 CG9271 CG6447 CG6478 .
TRiP has 2 RNAi stocks for FBgn0031057 available for purchase.
VDRC has 6 RNAi stocks for FBgn0031057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 114 of 4 0.80Down
Head162 84 of 4 0.70Down
Eye171 64 of 4 0.78Down
Thoracicoabdominal ganglion221 84 of 4 1.00None
Salivary gland362 214 of 4 1.64Up
Crop285 54 of 4 1.30Up
Midgut242 24 of 4 1.10None
Tubule766 214 of 4 3.50Up
Hindgut288 74 of 4 1.30Up
Heart557 494 of 4 2.53Up
Fat body703 894 of 4 3.19Up
Ovary330 64 of 4 1.50Up
Testis212 194 of 4 1.00None
Male accessory glands348 104 of 4 1.60Up
Virgin spermatheca425 184 of 4 1.93Up
Mated spermatheca470 114 of 4 2.13Up
Adult carcass459 474 of 4 2.10Up
Larval CNS254 204 of 4 1.15Up
Larval Salivary gland397 144 of 4 1.80Up
Larval midgut394 134 of 4 1.79Up
Larval tubule427 104 of 4 1.90Up
Larval hindgut377 114 of 4 1.71Up
Larval fat body231 144 of 4 1.00None
Larval trachea207 264 of 4 0.94None
Larval carcass278 164 of 4 1.26Up
S2 cells (growing)299 114 of 4 1.36Up
Whole fly220 74 of 4

Looking for CG14224-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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