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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14225-RA through 18771 annotations produced 1 hits



(CG14225):

Annotation Number : CG14225
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031055
Gbrowse : chrX:19566668-19569992 (-) // 100.0 //
Probeset : 1636415_at
Accessions : protein= NP_608343;, nucleotide= NM_134499;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004872 // receptor activity // inferred from sequence or structural similarity /// 0004896 // cytokine receptor activit
FlyMine data for FBgn0031055.
TRiP has 1 RNAi stocks for FBgn0031055 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.50None
Head23 ± 13 of 4 4.20Up
Eye13 ± 33 of 4 2.46None
Thoracicoabdominal ganglion2 ± 10 of 4 0.40None
Salivary gland6 ± 20 of 4 1.06None
Crop4 ± 10 of 4 0.70None
Midgut6 ± 10 of 4 1.20None
Tubule4 ± 00 of 4 0.70None
Hindgut2 ± 00 of 4 0.40None
Heart39 ± 14 of 4 7.03Up
Fat body46 ± 14 of 4 8.29Up
Ovary1 ± 10 of 4 0.30None
Testis3 ± 00 of 4 0.70None
Male accessory glands3 ± 10 of 4 0.60None
Virgin spermatheca18 ± 33 of 4 3.20Up
Mated spermatheca13 ± 11 of 4 2.29Up
Adult carcass36 ± 43 of 4 6.40Up
Larval CNS1 ± 10 of 4 0.32None
Larval Salivary gland5 ± 20 of 4 0.98None
Larval midgut6 ± 10 of 4 1.16None
Larval tubule11 ± 10 of 4 1.90None
Larval hindgut7 ± 20 of 4 1.37None
Larval fat body50 ± 74 of 4 8.90Up
Larval trachea6 ± 00 of 4 1.19None
Larval carcass24 ± 03 of 4 4.29Up
S2 cells (growing)20 ± 23 of 4 3.66Up
Whole fly5 ± 10 of 4

Looking for CG14225-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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