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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14226-RA through 18771 annotations produced 1 hits



verstopft (dome):

Annotation Number : CG14226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043903
Gbrowse : chrX:19570089-19577549 (-) // 100.0 //
Probeset : 1632381_at
Accessions : protein= NP_523412;, nucleotide= NM_078688;
Pathway : open tracheal system // traceable author statement /// 0007442 // hindgut morphogenesis // inferred from mutant phenoty
Interpro : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
FlyMine data for FBgn0043903.
BioGrid reports that CG14226 interacts with CG3355 CG8068 CG1594 CG1594 CG1594 CG1594 CG5993 CG5993 CG5993 CG4257 CG4257 .
TRiP has 5 RNAi stocks for FBgn0043903 available for purchase.
VDRC has 4 RNAi stocks for FBgn0043903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 44 of 4 1.20Up
Head97 44 of 4 0.70Down
Eye138 14 of 4 1.00None
Thoracicoabdominal ganglion92 24 of 4 0.70Down
Salivary gland450 204 of 4 3.28Up
Crop187 94 of 4 1.40Up
Midgut208 24 of 4 1.50Up
Tubule167 334 of 4 1.20None
Hindgut135 34 of 4 1.00None
Heart132 44 of 4 0.97None
Fat body49 74 of 4 0.36Down
Ovary361 134 of 4 2.60Up
Testis86 54 of 4 0.60Down
Male accessory glands187 74 of 4 1.40Up
Virgin spermatheca114 84 of 4 0.83None
Mated spermatheca156 154 of 4 1.14None
Adult carcass81 34 of 4 0.60Down
Larval CNS216 104 of 4 1.57Up
Larval Salivary gland211 144 of 4 1.54Up
Larval midgut190 64 of 4 1.39Up
Larval tubule123 34 of 4 0.90None
Larval hindgut164 44 of 4 1.20Up
Larval fat body40 34 of 4 0.30Down
Larval trachea215 134 of 4 1.57Up
Larval carcass160 94 of 4 1.16None
S2 cells (growing)196 34 of 4 1.43Up
Whole fly137 84 of 4

Looking for CG14226-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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