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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14228-RA through 18771 annotations produced 1 hits



Merlin (Mer):

Annotation Number : CG14228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086384
Gbrowse : chrX:19584620-19587531 (-) // 100.0 //
Probeset : 1623379_at
Accessions : protein= NP_523413;, nucleotide= NM_078689;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0086384.
Homophila reports that CG14228 is a close match (1e-12) to human gene EL1;EPB41 (NP_976218), a gene associated with Elliptocytosis-1, 611804 (3).
BioGrid reports that CG14228 interacts with CG15267 CG6441 CG14815 CG17050 CG17233 CG2009 CG2050 CG3052 CG5848 CG6958 CG7838 CG8383 CG9042 CG9277 CG9885 CG17610 CG11450 CG11450 CG3411 CG3411 CG4114 CG5580 CG10701 .
TRiP has 2 RNAi stocks for FBgn0086384 available for purchase.
VDRC has 1 RNAi stocks for FBgn0086384 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 14 of 4 0.50Down
Head87 ± 44 of 4 0.80None
Eye108 ± 14 of 4 1.02None
Thoracicoabdominal ganglion69 ± 14 of 4 0.60Down
Salivary gland109 ± 94 of 4 1.02None
Crop105 ± 54 of 4 1.00None
Midgut77 ± 24 of 4 0.70Down
Tubule49 ± 24 of 4 0.50Down
Hindgut110 ± 34 of 4 1.00None
Heart66 ± 54 of 4 0.62Down
Fat body74 ± 54 of 4 0.70Down
Ovary191 ± 24 of 4 1.80Up
Testis25 ± 14 of 4 0.20Down
Male accessory glands131 ± 54 of 4 1.20Up
Virgin spermatheca59 ± 64 of 4 0.55Down
Mated spermatheca64 ± 34 of 4 0.60Down
Adult carcass114 ± 64 of 4 1.10None
Larval CNS57 ± 34 of 4 0.54Down
Larval Salivary gland91 ± 14 of 4 0.86None
Larval midgut87 ± 14 of 4 0.82None
Larval tubule136 ± 64 of 4 1.30Up
Larval hindgut138 ± 54 of 4 1.30Up
Larval fat body80 ± 134 of 4 0.70None
Larval trachea122 ± 34 of 4 1.15None
Larval carcass181 ± 144 of 4 1.70Up
S2 cells (growing)188 ± 84 of 4 1.76Up
Whole fly106 ± 74 of 4

Looking for CG14228-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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