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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14230-RA through 18771 annotations produced 1 hits



(CG14230):

Annotation Number : CG14230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031062
Gbrowse : chrX:19598192-19600375 (+) // 100.0 //
Probeset : 1629272_at
Accessions : protein= NP_608349;, nucleotide= NM_134505;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0031062.
VDRC has 3 RNAi stocks for FBgn0031062 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 14 of 4 0.50Down
Head25 ± 24 of 4 0.40Down
Eye14 ± 14 of 4 0.24Down
Thoracicoabdominal ganglion23 ± 12 of 4 0.40Down
Salivary gland36 ± 32 of 4 0.59Down
Crop32 ± 30 of 4 0.50Down
Midgut27 ± 01 of 4 0.40Down
Tubule23 ± 30 of 4 0.40Down
Hindgut22 ± 10 of 4 0.40Down
Heart26 ± 14 of 4 0.43Down
Fat body36 ± 44 of 4 0.58Down
Ovary171 ± 34 of 4 2.80Up
Testis8 ± 00 of 4 0.10Down
Male accessory glands58 ± 21 of 4 0.90None
Virgin spermatheca15 ± 20 of 4 0.24Down
Mated spermatheca18 ± 11 of 4 0.30Down
Adult carcass22 ± 11 of 4 0.40Down
Larval CNS61 ± 44 of 4 0.98None
Larval Salivary gland54 ± 24 of 4 0.87None
Larval midgut24 ± 61 of 4 0.39Down
Larval tubule18 ± 10 of 4 0.30Down
Larval hindgut32 ± 51 of 4 0.52Down
Larval fat body16 ± 31 of 4 0.30Down
Larval trachea67 ± 74 of 4 1.08None
Larval carcass42 ± 81 of 4 0.68None
S2 cells (growing)59 ± 14 of 4 0.95None
Whole fly62 ± 34 of 4

Looking for CG14230-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime