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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14235-RC through 18771 annotations produced 1 hits



Cytochrome c oxidase subunitVIb /// (CG14235 /// CG18809):

Annotation Number : CG14235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031066
Gbrowse : chrX:19634607-19638371 (-) // 100.0 //
Probeset : 1624251_a_at
Accessions : protein= NP_728294; /// NP_728295; /// NP_728296; /// NP_728297; /// NP_728298;, nucleotide= NM_167678; /// NM_167679; /// NM_167680; /// NM_167681; /// NM_167682;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0008340 // determination of adult lifespa
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005751 // mitochondrial respiratory chain complex I
FlyMine data for FBgn0031066.
Homophila reports that CG14235 is a close match (2e-21) to human gene COX6B1 (NP_001854), a gene associated with Cytochrome c oxidase deficiency, 220110 (3).
BioGrid reports that CG14235 interacts with CG1818 CG17903 CG32043 CG5971 CG6779 CG7762 CG8251 .
VDRC has 1 RNAi stocks for FBgn0031066 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2470 ± 404 of 4 1.00None
Head2983 ± 854 of 4 1.20None
Eye3695 ± 254 of 4 1.47Up
Thoracicoabdominal ganglion3448 ± 864 of 4 1.40Up
Salivary gland5488 ± 984 of 4 2.18Up
Crop3387 ± 1504 of 4 1.30Up
Midgut3383 ± 1074 of 4 1.30Up
Tubule2855 ± 604 of 4 1.10Up
Hindgut3864 ± 1134 of 4 1.50Up
Heart3963 ± 2624 of 4 1.58Up
Fat body3325 ± 2674 of 4 1.32Up
Ovary1439 ± 214 of 4 0.60Down
Testis676 ± 294 of 4 0.30Down
Male accessory glands1501 ± 294 of 4 0.60Down
Virgin spermatheca3391 ± 1334 of 4 1.35Up
Mated spermatheca3232 ± 714 of 4 1.28Up
Adult carcass5244 ± 3184 of 4 2.10Up
Larval CNS1591 ± 1094 of 4 0.63Down
Larval Salivary gland2419 ± 624 of 4 0.96None
Larval midgut3851 ± 564 of 4 1.53Up
Larval tubule3331 ± 2284 of 4 1.30Up
Larval hindgut3451 ± 414 of 4 1.37Up
Larval fat body1673 ± 1664 of 4 0.70Down
Larval trachea2156 ± 1304 of 4 0.86None
Larval carcass3692 ± 3394 of 4 1.47Up
S2 cells (growing)1502 ± 144 of 4 0.60Down
Whole fly2516 ± 1754 of 4

Looking for CG14235-RC. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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