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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14237-RA through 18771 annotations produced 1 hits



(CG14237):

Annotation Number : CG14237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039428
Gbrowse : chr3R:22281857-22282964 (+) // 100.0 //
Probeset : 1627950_at
Accessions : protein= NP_651479;, nucleotide= NM_143222;
FlyMine data for FBgn0039428.
VDRC has 3 RNAi stocks for FBgn0039428 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.70None
Head3 ± 10 of 4 6.60None
Eye1 ± 00 of 4 2.84None
Thoracicoabdominal ganglion0 ± 00 of 4 1.60None
Salivary gland5 ± 20 of 411.53None
Crop0 ± 00 of 4 1.90None
Midgut0 ± 00 of 4 1.70Up
Tubule0 ± 00 of 4 1.80Up
Hindgut1 ± 00 of 4 2.30None
Heart1 ± 10 of 4 3.68None
Fat body1 ± 00 of 4 3.63Up
Ovary0 ± 00 of 4 0.80None
Testis1 ± 00 of 4 3.90Up
Male accessory glands0 ± 00 of 4 1.40None
Virgin spermatheca1 ± 00 of 4 2.74Up
Mated spermatheca1 ± 00 of 4 2.21None
Adult carcass2 ± 20 of 4 6.20None
Larval CNS0 ± 00 of 4 1.63None
Larval Salivary gland132 ± 213 of 4278.53Up
Larval midgut0 ± 00 of 4 1.74Up
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut5 ± 10 of 411.21None
Larval fat body0 ± 00 of 4 1.40None
Larval trachea0 ± 00 of 4 0.79None
Larval carcass0 ± 00 of 4 1.95Up
S2 cells (growing)0 ± 00 of 4 1.32None
Whole fly0 ± 00 of 4

Looking for CG14237-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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