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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14240-RA through 18771 annotations produced 1 hits



CG14240 (TwdlP):

Annotation Number : CG14240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039435
Gbrowse : chr3R:22446329-22447082 (-) // 100.0 //
Probeset : 1629588_at
Accessions : protein= NP_651485;, nucleotide= NM_143228;
FlyMine data for FBgn0039435.
BDGP gene expression has embryonic in situ data for CG14240: 2 pix of staining in 1 body parts.
VDRC has 6 RNAi stocks for FBgn0039435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head7 ± 10 of 4 0.40None
Eye3 ± 10 of 4 0.19Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.30None
Salivary gland13 ± 10 of 4 0.80None
Crop6 ± 10 of 4 0.40None
Midgut2 ± 00 of 4 0.20Down
Tubule4 ± 00 of 4 0.30Down
Hindgut5 ± 10 of 4 0.30Down
Heart7 ± 02 of 4 0.45None
Fat body6 ± 20 of 4 0.39None
Ovary4 ± 00 of 4 0.30Down
Testis80 ± 74 of 4 4.80Up
Male accessory glands8 ± 10 of 4 0.50None
Virgin spermatheca7 ± 00 of 4 0.42None
Mated spermatheca10 ± 31 of 4 0.63None
Adult carcass13 ± 02 of 4 0.80None
Larval CNS5 ± 20 of 4 0.35Down
Larval Salivary gland6 ± 10 of 4 0.39None
Larval midgut9 ± 40 of 4 0.58None
Larval tubule9 ± 21 of 4 0.50None
Larval hindgut6 ± 00 of 4 0.41None
Larval fat body14 ± 30 of 4 0.90None
Larval trachea10 ± 03 of 4 0.60None
Larval carcass235 ± 704 of 414.02None
S2 cells (growing)5 ± 10 of 4 0.35Down
Whole fly16 ± 33 of 4

Looking for CG14240-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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