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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14242-RA through 18771 annotations produced 1 hits



CG14242 (TwdlS):

Annotation Number : CG14242
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039443
Gbrowse : chr3R:22462435-22463182 (+) // 100.0 //
Probeset : 1639713_at
Accessions : protein= NP_651491;, nucleotide= NM_143234;
FlyMine data for FBgn0039443.
VDRC has 2 RNAi stocks for FBgn0039443 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.40None
Head5 ± 11 of 4 0.50None
Eye2 ± 11 of 4 0.24None
Thoracicoabdominal ganglion5 ± 00 of 4 0.50None
Salivary gland10 ± 20 of 4 0.99None
Crop5 ± 12 of 4 0.50None
Midgut5 ± 21 of 4 0.50None
Tubule4 ± 00 of 4 0.40Down
Hindgut4 ± 11 of 4 0.40None
Heart4 ± 11 of 4 0.44None
Fat body5 ± 22 of 4 0.50None
Ovary3 ± 01 of 4 0.30None
Testis3 ± 00 of 4 0.30None
Male accessory glands16 ± 23 of 4 1.50None
Virgin spermatheca6 ± 11 of 4 0.59None
Mated spermatheca6 ± 12 of 4 0.63None
Adult carcass8 ± 21 of 4 0.70None
Larval CNS5 ± 24 of 4 0.48None
Larval Salivary gland6 ± 11 of 4 0.57None
Larval midgut3 ± 11 of 4 0.34None
Larval tubule5 ± 20 of 4 0.50None
Larval hindgut4 ± 01 of 4 0.41None
Larval fat body9 ± 21 of 4 0.90None
Larval trachea6 ± 12 of 4 0.63None
Larval carcass7 ± 03 of 4 0.71None
S2 cells (growing)6 ± 02 of 4 0.62None
Whole fly11 ± 33 of 4

Looking for CG14242-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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