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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14248-RA through 18771 annotations produced 1 hits



beat-VII (beat-VII):

Annotation Number : CG14248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250908
Gbrowse : chr3R:22475055-22477311 (-) // 100.0 //
Probeset : 1635716_at
Accessions : protein= NP_733162;, nucleotide= NM_170283;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0250908.
VDRC has 3 RNAi stocks for FBgn0250908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 ± 104 of 438.20Up
Head8 ± 30 of 4 4.20None
Eye2 ± 10 of 4 1.33None
Thoracicoabdominal ganglion54 ± 54 of 426.70Up
Salivary gland2 ± 00 of 4 1.23None
Crop0 ± 00 of 4 0.30None
Midgut0 ± 00 of 4 0.50None
Tubule0 ± 00 of 4 0.30Down
Hindgut0 ± 00 of 4 0.40None
Heart0 ± 00 of 4 0.26None
Fat body1 ± 00 of 4 0.73None
Ovary0 ± 00 of 4 0.30None
Testis4 ± 10 of 4 2.10None
Male accessory glands1 ± 00 of 4 0.90None
Virgin spermatheca1 ± 00 of 4 0.78None
Mated spermatheca3 ± 10 of 4 1.49None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS24 ± 53 of 412.32Up
Larval Salivary gland1 ± 00 of 4 0.74None
Larval midgut1 ± 00 of 4 0.57None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.42None
Larval fat body1 ± 00 of 4 0.60None
Larval trachea1 ± 10 of 4 0.84None
Larval carcass1 ± 00 of 4 0.51None
S2 cells (growing)0 ± 00 of 4 0.41None
Whole fly2 ± 00 of 4

Looking for CG14248-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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