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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14258-RA through 18771 annotations produced 1 hits



(CG14258):

Annotation Number : CG14258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039482
Gbrowse : chr3R:22918900-22919858 (+) // 100.0 //
Probeset : 1629727_at
Accessions : protein= NP_651531;, nucleotide= NM_143274;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039482.
VDRC has 3 RNAi stocks for FBgn0039482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.10None
Head5 ± 10 of 4 3.10None
Eye9 ± 12 of 4 6.00Up
Thoracicoabdominal ganglion2 ± 00 of 4 1.60None
Salivary gland4 ± 10 of 4 2.75None
Crop4 ± 20 of 4 3.00None
Midgut3 ± 10 of 4 2.10None
Tubule3 ± 00 of 4 2.30Up
Hindgut2 ± 00 of 4 1.70None
Heart3 ± 21 of 4 2.33None
Fat body2 ± 20 of 4 1.75None
Ovary2 ± 00 of 4 1.40None
Testis5 ± 11 of 4 3.40None
Male accessory glands3 ± 20 of 4 2.20None
Virgin spermatheca2 ± 10 of 4 1.73None
Mated spermatheca3 ± 00 of 4 2.11None
Adult carcass7 ± 30 of 4 4.90None
Larval CNS3 ± 21 of 4 2.11None
Larval Salivary gland14 ± 14 of 4 9.14Up
Larval midgut5 ± 10 of 4 3.56None
Larval tubule1 ± 00 of 4 1.00None
Larval hindgut131 ± 164 of 482.13Up
Larval fat body3 ± 10 of 4 1.90None
Larval trachea1231 ± 2534 of 4769.95Up
Larval carcass3038 ± 3764 of 41899.14Up
S2 cells (growing)1 ± 00 of 4 0.75None
Whole fly1 ± 00 of 4

Looking for CG14258-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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