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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14275-RA through 18771 annotations produced 1 hits



(CG14275):

Annotation Number : CG14275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032022
Gbrowse : chr2L:8327457-8332911 (+) // 100.0 //
Probeset : 1639733_s_at
Accessions : protein= NP_609211; /// NP_723374;, nucleotide= NM_135367; /// NM_164807;
FlyMine data for FBgn0032022.
BDGP gene expression has embryonic in situ data for CG14275: 20 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0032022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 22 of 4 0.10Down
Head552 ± 344 of 4 4.00Up
Eye567 ± 684 of 4 4.07Up
Thoracicoabdominal ganglion33 ± 14 of 4 0.20Down
Salivary gland425 ± 164 of 4 3.05Up
Crop208 ± 64 of 4 1.50Up
Midgut13 ± 10 of 4 0.10Down
Tubule24 ± 170 of 4 0.20Down
Hindgut2595 ± 974 of 418.60Up
Heart65 ± 34 of 4 0.47Down
Fat body84 ± 104 of 4 0.61Down
Ovary28 ± 44 of 4 0.20Down
Testis12 ± 03 of 4 0.10Down
Male accessory glands248 ± 164 of 4 1.80Up
Virgin spermatheca59 ± 74 of 4 0.42Down
Mated spermatheca66 ± 94 of 4 0.47Down
Adult carcass446 ± 354 of 4 3.20Up
Larval CNS34 ± 54 of 4 0.25Down
Larval Salivary gland5 ± 10 of 4 0.04Down
Larval midgut10 ± 11 of 4 0.08Down
Larval tubule5 ± 20 of 4 0.00Down
Larval hindgut1123 ± 594 of 4 8.05Up
Larval fat body13 ± 32 of 4 0.10Down
Larval trachea112 ± 114 of 4 0.81None
Larval carcass236 ± 544 of 4 1.70None
S2 cells (growing)4 ± 00 of 4 0.04Down
Whole fly139 ± 124 of 4

Looking for CG14275-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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