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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1428-RA through 18771 annotations produced 1 hits



(CG1428):

Annotation Number : CG1428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032967
Gbrowse : chr2L:21906288-21908332 (+) // 100.0 //
Probeset : 1641177_at
Accessions : protein= NP_610127;, nucleotide= NM_136283;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0032967.
BDGP gene expression has embryonic in situ data for CG1428: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head0 00 of 4 0.10Down
Eye0 00 of 4 0.05Down
Thoracicoabdominal ganglion4 11 of 4 0.50None
Salivary gland5 20 of 4 0.73None
Crop1 00 of 4 0.20Down
Midgut1 00 of 4 0.20Down
Tubule4 00 of 4 0.60Down
Hindgut1 00 of 4 0.20Down
Heart1 00 of 4 0.13Down
Fat body2 20 of 4 0.33None
Ovary0 00 of 4 0.00Down
Testis141 44 of 417.60Up
Male accessory glands2 10 of 4 0.30None
Virgin spermatheca2 00 of 4 0.28None
Mated spermatheca1 00 of 4 0.18Down
Adult carcass1 00 of 4 0.10Down
Larval CNS1 10 of 4 0.21Down
Larval Salivary gland3 10 of 4 0.43None
Larval midgut1 00 of 4 0.16Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut0 00 of 4 0.10Down
Larval fat body23 101 of 4 2.90None
Larval trachea0 00 of 4 0.07Down
Larval carcass1 00 of 4 0.14Down
S2 cells (growing)2 10 of 4 0.31None
Whole fly8 11 of 4

Looking for CG1428-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime