FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14291-RA through 18771 annotations produced 1 hits

/// GA12883 /// CG14291 (CG14291 /// DpseGA12883 /// DvirGJ14185):

Annotation Number : CG14291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038660
Gbrowse : chr3R:14736765-14738647 (-) // 100.0 //
Probeset : 1639834_at
Accessions : protein= NP_650760;, nucleotide= NM_142503;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity //
FlyMine data for FBgn0038660.
BDGP gene expression has embryonic in situ data for CG14291: 18 pix of staining in 8 body parts.
Homophila reports that CG14291 is a close match (5e-13) to human gene IDS;MPS2;SIDS (NP_006114), a gene associated with Mucopolysaccharidosis II (3).
VDRC has 2 RNAi stocks for FBgn0038660 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	82 ± 2	4 of 4	4.00	Up
Head	53 ± 2	4 of 4	2.60	Up
Eye	20 ± 2	4 of 4	0.99	None
Thoracicoabdominal ganglion	95 ± 2	4 of 4	4.60	Up
Salivary gland	34 ± 7	4 of 4	1.66	None
Crop	11 ± 1	4 of 4	0.60	Down
Midgut	15 ± 0	4 of 4	0.70	None
Tubule	13 ± 0	3 of 4	0.70	Down
Hindgut	24 ± 1	4 of 4	1.20	None
Heart	33 ± 4	4 of 4	1.63	None
Fat body	17 ± 4	4 of 4	0.86	None
Ovary	7 ± 1	4 of 4	0.40	Down
Testis	14 ± 1	4 of 4	0.70	None
Male accessory glands	40 ± 4	4 of 4	2.00	Up
Virgin spermatheca	21 ± 1	4 of 4	1.03	None
Mated spermatheca	35 ± 5	4 of 4	1.73	None
Adult carcass	25 ± 0	3 of 4	1.20	None
Larval CNS	111 ± 10	4 of 4	5.40	Up
Larval Salivary gland	36 ± 4	4 of 4	1.79	Up
Larval midgut	29 ± 1	4 of 4	1.41	Up
Larval tubule	48 ± 1	4 of 4	2.40	Up
Larval hindgut	136 ± 7	4 of 4	6.61	Up
Larval fat body	770 ± 83	4 of 4	37.40	Up
Larval trachea	495 ± 47	4 of 4	24.01	Up
Larval carcass	292 ± 10	4 of 4	14.16	Up
S2 cells (growing)	320 ± 6	4 of 4	15.56	Up
Whole fly	20 ± 2	4 of 4

Looking for CG14291-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720