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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1430-RA through 18771 annotations produced 1 hits



bystin (bys):

Annotation Number : CG1430
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010292
Gbrowse : chrX:7795934-7797679 (+) // 100.0 //
Probeset : 1640145_at
Accessions : protein= NP_511074;, nucleotide= NM_078519;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
FlyMine data for FBgn0010292.
BDGP gene expression has embryonic in situ data for bys: 24 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0010292 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010292 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 14 of 4 0.50Down
Head86 ± 64 of 4 0.50Down
Eye62 ± 34 of 4 0.36Down
Thoracicoabdominal ganglion101 ± 54 of 4 0.60Down
Salivary gland138 ± 64 of 4 0.80Down
Crop87 ± 34 of 4 0.50Down
Midgut94 ± 44 of 4 0.50Down
Tubule82 ± 84 of 4 0.50Down
Hindgut79 ± 34 of 4 0.50Down
Heart88 ± 44 of 4 0.51Down
Fat body118 ± 174 of 4 0.68Down
Ovary368 ± 114 of 4 2.10Up
Testis34 ± 24 of 4 0.20Down
Male accessory glands185 ± 44 of 4 1.10None
Virgin spermatheca126 ± 34 of 4 0.73Down
Mated spermatheca178 ± 84 of 4 1.03None
Adult carcass97 ± 34 of 4 0.60Down
Larval CNS156 ± 104 of 4 0.90Down
Larval Salivary gland143 ± 84 of 4 0.83Down
Larval midgut67 ± 44 of 4 0.39Down
Larval tubule58 ± 24 of 4 0.30Down
Larval hindgut98 ± 104 of 4 0.57Down
Larval fat body58 ± 54 of 4 0.30Down
Larval trachea189 ± 324 of 4 1.09None
Larval carcass100 ± 204 of 4 0.58Down
S2 cells (growing)155 ± 34 of 4 0.90Down
Whole fly173 ± 44 of 4

Looking for CG1430-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime