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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14301-RA through 18771 annotations produced 1 hits



(CG14301):

Annotation Number : CG14301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038632
Gbrowse : chr3R:14455394-14456754 (-) // 100.0 //
Probeset : 1627720_at
Accessions : protein= NP_650734;, nucleotide= NM_142477;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0038632.
VDRC has 1 RNAi stocks for FBgn0038632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 2.10None
Head6 ± 00 of 4 1.80None
Eye15 ± 14 of 4 4.19Up
Thoracicoabdominal ganglion2 ± 00 of 4 0.70None
Salivary gland5 ± 20 of 4 1.39None
Crop3 ± 10 of 4 1.00None
Midgut2 ± 10 of 4 0.80None
Tubule1 ± 00 of 4 0.40Down
Hindgut2 ± 10 of 4 0.60None
Heart2 ± 00 of 4 0.78None
Fat body0 ± 00 of 4 0.24None
Ovary1 ± 00 of 4 0.30None
Testis24 ± 14 of 4 6.30Up
Male accessory glands3 ± 20 of 4 0.90None
Virgin spermatheca0 ± 00 of 4 0.20None
Mated spermatheca2 ± 10 of 4 0.76None
Adult carcass4 ± 10 of 4 1.10None
Larval CNS0 ± 00 of 4 0.24None
Larval Salivary gland5 ± 10 of 4 1.33None
Larval midgut2 ± 00 of 4 0.63None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut11 ± 10 of 4 3.09Up
Larval fat body3 ± 10 of 4 0.90None
Larval trachea5 ± 30 of 4 1.32None
Larval carcass1 ± 00 of 4 0.47None
S2 cells (growing)2 ± 10 of 4 0.70None
Whole fly3 ± 10 of 4

Looking for CG14301-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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