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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14314-RA through 18771 annotations produced 1 hits



(CG14314):

Annotation Number : CG14314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038581
Gbrowse : chr3R:14041855-14043741 (+) // 100.0 //
Probeset : 1639842_at
Accessions : protein= NP_650690;, nucleotide= NM_142433;
FlyMine data for FBgn0038581.
BDGP gene expression has embryonic in situ data for CG14314: 14 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0038581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain189 ± 44 of 4 7.20Up
Head81 ± 64 of 4 3.10Up
Eye57 ± 44 of 4 2.18Up
Thoracicoabdominal ganglion196 ± 74 of 4 7.50Up
Salivary gland11 ± 20 of 4 0.43Down
Crop9 ± 10 of 4 0.30Down
Midgut11 ± 00 of 4 0.40Down
Tubule4 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.20Down
Heart8 ± 14 of 4 0.33Down
Fat body14 ± 21 of 4 0.55Down
Ovary9 ± 10 of 4 0.40Down
Testis164 ± 64 of 4 6.20Up
Male accessory glands7 ± 10 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 0.20Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass30 ± 24 of 4 1.20None
Larval CNS154 ± 114 of 4 5.86Up
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut6 ± 10 of 4 0.26Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut5 ± 00 of 4 0.21Down
Larval fat body29 ± 82 of 4 1.10None
Larval trachea6 ± 21 of 4 0.23Down
Larval carcass3 ± 20 of 4 0.15Down
S2 cells (growing)4 ± 10 of 4 0.18Down
Whole fly26 ± 14 of 4

Looking for CG14314-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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