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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14321-RA through 18771 annotations produced 1 hits



(CG14321):

Annotation Number : CG14321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038540
Gbrowse : chr3R:13559359-13559807 (+) // 100.0 //
Probeset : 1640733_at
Accessions : protein= NP_650650;, nucleotide= NM_142393;
FlyMine data for FBgn0038540.
VDRC has 2 RNAi stocks for FBgn0038540 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 74 of 411.60Up
Head52 44 of 4 4.50Up
Eye25 24 of 4 2.15Up
Thoracicoabdominal ganglion157 54 of 413.30Up
Salivary gland20 10 of 4 1.72Up
Crop5 10 of 4 0.50Down
Midgut1 00 of 4 0.10Down
Tubule4 00 of 4 0.30Down
Hindgut1 00 of 4 0.10Down
Heart3 10 of 4 0.27Down
Fat body5 30 of 4 0.44Down
Ovary2 10 of 4 0.20Down
Testis8 00 of 4 0.70None
Male accessory glands6 20 of 4 0.50None
Virgin spermatheca3 10 of 4 0.27Down
Mated spermatheca6 00 of 4 0.53Down
Adult carcass6 30 of 4 0.60None
Larval CNS340 134 of 428.76Up
Larval Salivary gland6 20 of 4 0.57None
Larval midgut2 10 of 4 0.18Down
Larval tubule4 20 of 4 0.40Down
Larval hindgut4 10 of 4 0.38Down
Larval fat body8 20 of 4 0.70None
Larval trachea2 10 of 4 0.18Down
Larval carcass4 00 of 4 0.41Down
S2 cells (growing)3 10 of 4 0.27Down
Whole fly11 10 of 4

Looking for CG14321-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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