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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1433-RA through 18771 annotations produced 1 hits

Another transcription unit (Atu):

Annotation Number : CG1433
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019637
Gbrowse : chr3R:1439085-1441664 (+) // 100.0 //
Probeset : 1630079_at
Accessions : protein= NP_524240;, nucleotide= NM_079516;
FlyMine data for FBgn0019637.
BDGP gene expression has embryonic in situ data for Atu: 23 pix of staining in 22 body parts.
BioGrid reports that CG1433 interacts with CG32096 .
VDRC has 2 RNAi stocks for FBgn0019637 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 44 of 4 0.80Down
Head46 14 of 4 0.50Down
Eye44 14 of 4 0.48Down
Thoracicoabdominal ganglion79 24 of 4 0.90Down
Salivary gland63 44 of 4 0.68Down
Crop69 24 of 4 0.70Down
Midgut39 14 of 4 0.40Down
Tubule76 34 of 4 0.80Down
Hindgut65 24 of 4 0.70Down
Heart56 44 of 4 0.61Down
Fat body44 64 of 4 0.48Down
Ovary165 34 of 4 1.80Up
Testis25 14 of 4 0.30Down
Male accessory glands90 84 of 4 1.00None
Virgin spermatheca45 24 of 4 0.50Down
Mated spermatheca54 14 of 4 0.58Down
Adult carcass47 14 of 4 0.50Down
Larval CNS167 124 of 4 1.81Up
Larval Salivary gland119 74 of 4 1.29Up
Larval midgut50 64 of 4 0.55Down
Larval tubule78 34 of 4 0.90Down
Larval hindgut109 34 of 4 1.18Up
Larval fat body54 74 of 4 0.60Down
Larval trachea105 114 of 4 1.14None
Larval carcass101 164 of 4 1.10None
S2 cells (growing)160 24 of 4 1.74Up
Whole fly92 24 of 4

Looking for CG1433-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime