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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14334-RA through 18771 annotations produced 1 hits



beaten path IIa (beat-IIa):

Annotation Number : CG14334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038498
Gbrowse : chr3R:13145720-13191839 (-) // 100.0 //
Probeset : 1636035_at
Accessions : protein= NP_524384;, nucleotide= NM_079660;
Pathway : 0005576 // extracellular region // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038498.
BDGP gene expression has embryonic in situ data for beat-IIa: 30 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0038498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain488 ± 194 of 436.80Up
Head92 ± 34 of 4 6.90Up
Eye35 ± 14 of 4 2.69Up
Thoracicoabdominal ganglion468 ± 74 of 435.30Up
Salivary gland17 ± 21 of 4 1.29None
Crop10 ± 14 of 4 0.80None
Midgut3 ± 00 of 4 0.20Down
Tubule5 ± 01 of 4 0.40Down
Hindgut4 ± 10 of 4 0.30Down
Heart4 ± 11 of 4 0.34Down
Fat body10 ± 34 of 4 0.78None
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 01 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.30Down
Virgin spermatheca6 ± 02 of 4 0.47Down
Mated spermatheca7 ± 11 of 4 0.52Down
Adult carcass7 ± 21 of 4 0.60None
Larval CNS211 ± 314 of 415.96Up
Larval Salivary gland6 ± 02 of 4 0.45Down
Larval midgut5 ± 13 of 4 0.39Down
Larval tubule4 ± 11 of 4 0.30Down
Larval hindgut6 ± 04 of 4 0.47Down
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea3 ± 21 of 4 0.28Down
Larval carcass4 ± 12 of 4 0.36Down
S2 cells (growing)3 ± 01 of 4 0.30Down
Whole fly13 ± 14 of 4

Looking for CG14334-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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