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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14341-RA through 18771 annotations produced 1 hits



(CG14341):

Annotation Number : CG14341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031315
Gbrowse : chr2L:1166559-1167213 (+) // 100.0 //
Probeset : 1626149_at
Accessions : protein= NP_608580; /// NP_722686;, nucleotide= NM_134736; /// NM_164407;
FlyMine data for FBgn0031315.
BDGP gene expression has embryonic in situ data for CG14341: 4 pix of staining in 1 body parts.
BioGrid reports that CG14341 interacts with CG15631 CG2199 CG4183 .
VDRC has 2 RNAi stocks for FBgn0031315 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head3 ± 10 of 4 1.30None
Eye1 ± 00 of 4 0.59None
Thoracicoabdominal ganglion2 ± 00 of 4 1.00None
Salivary gland8 ± 42 of 4 3.13None
Crop3 ± 10 of 4 1.10None
Midgut2 ± 00 of 4 0.80None
Tubule3 ± 00 of 4 1.20Up
Hindgut2 ± 11 of 4 0.90None
Heart2 ± 10 of 4 0.83None
Fat body2 ± 20 of 4 0.90None
Ovary1 ± 00 of 4 0.50None
Testis1 ± 01 of 4 0.70None
Male accessory glands4 ± 10 of 4 1.80None
Virgin spermatheca1 ± 00 of 4 0.48None
Mated spermatheca1 ± 00 of 4 0.54None
Adult carcass1 ± 00 of 4 0.70None
Larval CNS2 ± 00 of 4 0.88None
Larval Salivary gland3 ± 10 of 4 1.20None
Larval midgut0 ± 00 of 4 0.28Down
Larval tubule0 ± 00 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.38Down
Larval fat body8 ± 12 of 4 3.20Up
Larval trachea1 ± 10 of 4 0.62None
Larval carcass3 ± 00 of 4 1.34None
S2 cells (growing)2 ± 00 of 4 0.94None
Whole fly2 ± 00 of 4

Looking for CG14341-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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