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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14354-RA through 18771 annotations produced 1 hits


(CG14354):

Annotation Number : CG14354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039376
Gbrowse : chr3R:21641200-21642296 (+) // 100.0 //
Probeset : 1636515_at
Accessions : protein= NP_651375; /// NP_651433;, nucleotide= NM_143118; /// NM_143176;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039376.
BDGP gene expression has embryonic in situ data for CG14354: 6 pix of staining in 1 body parts.
BioGrid reports that CG14354 interacts with CG4229 CG15638 CG8697 CG9986 .
VDRC has 2 RNAi stocks for FBgn0039376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head5 ± 10 of 4 0.20Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland5 ± 00 of 4 0.17Down
Crop1 ± 00 of 4 0.10Down
Midgut3 ± 00 of 4 0.10Down
Tubule7 ± 00 of 4 0.20Down
Hindgut6 ± 20 of 4 0.20Down
Heart1 ± 00 of 4 0.04Down
Fat body4 ± 20 of 4 0.16Down
Ovary1 ± 00 of 4 0.10Down
Testis335 ± 44 of 411.10Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.11Down
Mated spermatheca6 ± 20 of 4 0.22Down
Adult carcass4 ± 00 of 4 0.10Down
Larval CNS5 ± 30 of 4 0.17Down
Larval Salivary gland2 ± 00 of 4 0.07Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule7 ± 20 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.09Down
Larval fat body53 ± 251 of 4 1.80None
Larval trachea3 ± 40 of 4 0.11Down
Larval carcass2 ± 00 of 4 0.07Down
S2 cells (growing)3 ± 00 of 4 0.10Down
Whole fly30 ± 20 of 4

Looking for CG14354-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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