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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14358-RA through 18771 annotations produced 1 hits


Annotation Number : CG14358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038199
Gbrowse : chr3R:9918357-9918918 (-) // 100.0 //
Probeset : 1629448_at
Accessions : protein= NP_001097784;, nucleotide= NM_001104314;
FlyMine data for FBgn0038199.
VDRC has 3 RNAi stocks for FBgn0038199 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 34 of 4 9.40Up
Head17 32 of 4 1.90None
Eye6 00 of 4 0.73None
Thoracicoabdominal ganglion239 154 of 427.40Up
Salivary gland9 40 of 4 1.10None
Crop5 20 of 4 0.60None
Midgut73 54 of 4 8.50Up
Tubule7 10 of 4 0.80None
Hindgut30 04 of 4 3.50Up
Heart2 10 of 4 0.24Down
Fat body9 40 of 4 1.11None
Ovary1 00 of 4 0.20Down
Testis3 10 of 4 0.40Down
Male accessory glands7 40 of 4 0.80None
Virgin spermatheca22 24 of 4 2.62Up
Mated spermatheca23 103 of 4 2.64None
Adult carcass3 10 of 4 0.40None
Larval CNS16 22 of 4 1.89Up
Larval Salivary gland3 00 of 4 0.38Down
Larval midgut46 14 of 4 5.30Up
Larval tubule3 10 of 4 0.40Down
Larval hindgut13 11 of 4 1.59None
Larval fat body1 00 of 4 0.20Down
Larval trachea3 00 of 4 0.36Down
Larval carcass2 10 of 4 0.30Down
S2 cells (growing)1 00 of 4 0.20Down
Whole fly8 00 of 4

Looking for CG14358-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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