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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14366-RA through 18771 annotations produced 1 hits



CG14365 (CG34383):

Annotation Number : CG14366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085412
Gbrowse : chr3R:9571396-9573727 (+) // 100.0 //
Probeset : 1623585_at
Accessions : protein= NP_001097775; /// NP_001097776; /// NP_001097777; /// NP_001097778; /// NP_001138047;, nucleotide= NM_001104305; /// NM_001104306; /// NM_001104307; /// NM_001104308; /// NM_001144575;
FlyMine data for FBgn0085412.
VDRC has 5 RNAi stocks for FBgn0085412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 21 of 4 2.60None
Head7 ± 10 of 4 2.10None
Eye2 ± 10 of 4 0.84None
Thoracicoabdominal ganglion12 ± 23 of 4 3.60Up
Salivary gland19 ± 11 of 4 5.39Up
Crop4 ± 21 of 4 1.40None
Midgut5 ± 10 of 4 1.40None
Tubule6 ± 00 of 4 1.80Up
Hindgut4 ± 10 of 4 1.30None
Heart3 ± 00 of 4 0.91None
Fat body11 ± 71 of 4 3.18None
Ovary4 ± 00 of 4 1.30None
Testis1 ± 00 of 4 0.50None
Male accessory glands10 ± 30 of 4 3.00None
Virgin spermatheca4 ± 10 of 4 1.35None
Mated spermatheca7 ± 10 of 4 2.07None
Adult carcass7 ± 30 of 4 2.20None
Larval CNS6 ± 11 of 4 1.89None
Larval Salivary gland10 ± 21 of 4 2.89None
Larval midgut7 ± 00 of 4 2.18None
Larval tubule7 ± 00 of 4 2.20None
Larval hindgut7 ± 01 of 4 1.99None
Larval fat body12 ± 30 of 4 3.50None
Larval trachea10 ± 20 of 4 3.10Up
Larval carcass6 ± 10 of 4 1.85None
S2 cells (growing)7 ± 12 of 4 2.16None
Whole fly3 ± 10 of 4

Looking for CG14366-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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