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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14376-RA through 18771 annotations produced 1 hits



CG14376 (Ir87a):

Annotation Number : CG14376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038153
Gbrowse : chr3R:9245994-9248862 (+) // 100.0 //
Probeset : 1632241_at
Accessions : protein= NP_650290;, nucleotide= NM_142033;
Pathway : 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0038153.
VDRC has 2 RNAi stocks for FBgn0038153 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 2.00None
Head5 ± 20 of 4 2.90None
Eye1 ± 00 of 4 0.73None
Thoracicoabdominal ganglion6 ± 00 of 4 3.20Up
Salivary gland11 ± 30 of 4 5.79None
Crop5 ± 10 of 4 2.70None
Midgut2 ± 00 of 4 1.30None
Tubule5 ± 10 of 4 2.90Up
Hindgut9 ± 10 of 4 4.70Up
Heart3 ± 10 of 4 1.78None
Fat body15 ± 81 of 4 7.96None
Ovary1 ± 00 of 4 0.90None
Testis3 ± 10 of 4 1.80None
Male accessory glands10 ± 11 of 4 5.70Up
Virgin spermatheca10 ± 30 of 4 5.39None
Mated spermatheca10 ± 20 of 4 5.64Up
Adult carcass3 ± 10 of 4 1.80None
Larval CNS9 ± 40 of 4 5.10Up
Larval Salivary gland3 ± 10 of 4 1.88None
Larval midgut5 ± 10 of 4 2.77None
Larval tubule9 ± 10 of 4 4.80Up
Larval hindgut5 ± 10 of 4 2.60None
Larval fat body7 ± 20 of 4 3.90None
Larval trachea3 ± 20 of 4 1.58None
Larval carcass6 ± 00 of 4 3.49Up
S2 cells (growing)3 ± 00 of 4 1.92None
Whole fly1 ± 00 of 4

Looking for CG14376-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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