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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14379-RA through 18771 annotations produced 1 hits


CheA87a (CheA87a):

Annotation Number : CG14379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038142
Gbrowse : chr3R:9195390-9195998 (+) // 100.0 //
Probeset : 1636657_at
Accessions : protein= NP_650280;, nucleotide= NM_142023;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038142.
VDRC has 2 RNAi stocks for FBgn0038142 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head107 ± 124 of 4 0.90None
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 40 of 4 0.05Down
Crop2 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.03Down
Fat body3 ± 30 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass541 ± 134 of 4 4.40Up
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly121 ± 64 of 4

Looking for CG14379-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime