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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14383-RA through 18771 annotations produced 1 hits


(CG14383):

Annotation Number : CG14383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038102
Gbrowse : chr3R:8813221-8814220 (-) // 100.0 //
Probeset : 1632246_at
Accessions : protein= NP_650245;, nucleotide= NM_141988;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038102.
BioGrid reports that CG14383 interacts with CG31029 CG32626 CG14612 CG15150 CG7421 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland7 ± 60 of 4 0.49None
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis186 ± 24 of 412.10Up
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.05Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland0 ± 00 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body31 ± 190 of 4 2.10None
Larval trachea0 ± 00 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.04Down
Whole fly15 ± 10 of 4

Looking for CG14383-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime