Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1440-RA through 18771 annotations produced 1 hits



/// (CG1440 /// DsimGD16898):

Annotation Number : CG1440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030038
Gbrowse : chrX:8331112-8334969 (+) // 100.0 //
Probeset : 1637531_at
Accessions : protein= NP_001096906; /// NP_001096907; /// NP_572477;, nucleotide= NM_001103436; /// NM_001103437; /// NM_132249;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0030038.
BDGP gene expression has embryonic in situ data for CG1440: 27 pix of staining in 9 body parts.
Homophila reports that CG1440 is a close match (6e-156) to human gene BLMH;BMH (NP_000377), a gene associated with {Alzheimer disease, susceptibility to}, 104300 (3).
VDRC has 2 RNAi stocks for FBgn0030038 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 ± 84 of 4 0.70Down
Head169 ± 34 of 4 0.60Down
Eye106 ± 74 of 4 0.40Down
Thoracicoabdominal ganglion194 ± 174 of 4 0.70Down
Salivary gland359 ± 121 of 4 1.34Up
Crop183 ± 54 of 4 0.70Down
Midgut166 ± 54 of 4 0.60Down
Tubule954 ± 204 of 4 3.60Up
Hindgut206 ± 54 of 4 0.80Down
Heart164 ± 54 of 4 0.61Down
Fat body195 ± 190 of 4 0.73Down
Ovary477 ± 84 of 4 1.80Up
Testis460 ± 184 of 4 1.70Up
Male accessory glands691 ± 224 of 4 2.60Up
Virgin spermatheca257 ± 231 of 4 0.96None
Mated spermatheca237 ± 191 of 4 0.89None
Adult carcass189 ± 42 of 4 0.70Down
Larval CNS201 ± 274 of 4 0.75Down
Larval Salivary gland325 ± 224 of 4 1.22None
Larval midgut219 ± 74 of 4 0.82Down
Larval tubule1193 ± 424 of 4 4.50Up
Larval hindgut193 ± 104 of 4 0.72Down
Larval fat body347 ± 114 of 4 1.30Up
Larval trachea132 ± 134 of 4 0.49Down
Larval carcass220 ± 214 of 4 0.82None
S2 cells (growing)364 ± 54 of 4 1.36Up
Whole fly267 ± 113 of 4

Looking for CG1440-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime