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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14401-RA through 18771 annotations produced 1 hits



(CG14401):

Annotation Number : CG14401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032900
Gbrowse : chr2L:20869846-20871055 (+) // 100.0 //
Probeset : 1632212_at
Accessions : protein= NP_610072;, nucleotide= NM_136228;
FlyMine data for FBgn0032900.
VDRC has 2 RNAi stocks for FBgn0032900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 04 of 4 0.40None
Head88 ± 84 of 4 1.70Up
Eye168 ± 134 of 4 3.20Up
Thoracicoabdominal ganglion56 ± 44 of 4 1.10None
Salivary gland828 ± 314 of 415.80Up
Crop222 ± 124 of 4 4.20Up
Midgut26 ± 32 of 4 0.50None
Tubule330 ± 254 of 4 6.30Up
Hindgut375 ± 134 of 4 7.20Up
Heart579 ± 394 of 411.05Up
Fat body44 ± 94 of 4 0.85None
Ovary22 ± 22 of 4 0.40None
Testis48 ± 44 of 4 0.90None
Male accessory glands236 ± 224 of 4 4.50Up
Virgin spermatheca47 ± 73 of 4 0.91None
Mated spermatheca34 ± 13 of 4 0.66None
Adult carcass154 ± 54 of 4 3.00Up
Larval CNS6 ± 10 of 4 0.13Down
Larval Salivary gland20 ± 21 of 4 0.39None
Larval midgut38 ± 54 of 4 0.73None
Larval tubule346 ± 124 of 4 6.60Up
Larval hindgut286 ± 44 of 4 5.46Up
Larval fat body333 ± 374 of 4 6.40Up
Larval trachea121 ± 284 of 4 2.32Up
Larval carcass265 ± 134 of 4 5.05Up
S2 cells (growing)18 ± 10 of 4 0.36None
Whole fly52 ± 114 of 4

Looking for CG14401-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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