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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14407-RA through 18771 annotations produced 1 hits



(CG14407):

Annotation Number : CG14407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030584
Gbrowse : chrX:14731499-14732230 (-) // 100.0 //
Probeset : 1629082_at
Accessions : protein= NP_572974;, nucleotide= NM_132746;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreduct
FlyMine data for FBgn0030584.
BDGP gene expression has embryonic in situ data for CG14407: 8 pix of staining in 1 body parts.
Homophila reports that CG14407 is a close match (9e-36) to human gene (NP_057501), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0030584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain655 ± 174 of 4 1.40Up
Head507 ± 544 of 4 1.10None
Eye633 ± 284 of 4 1.40Up
Thoracicoabdominal ganglion571 ± 174 of 4 1.30Up
Salivary gland375 ± 64 of 4 0.83None
Crop463 ± 184 of 4 1.00None
Midgut419 ± 94 of 4 0.90None
Tubule604 ± 244 of 4 1.30Up
Hindgut854 ± 244 of 4 1.90Up
Heart602 ± 104 of 4 1.33Up
Fat body486 ± 574 of 4 1.07None
Ovary429 ± 124 of 4 0.90None
Testis369 ± 94 of 4 0.80None
Male accessory glands168 ± 74 of 4 0.40Down
Virgin spermatheca447 ± 214 of 4 0.99None
Mated spermatheca419 ± 34 of 4 0.93None
Adult carcass735 ± 154 of 4 1.60Up
Larval CNS338 ± 334 of 4 0.75Down
Larval Salivary gland235 ± 84 of 4 0.52Down
Larval midgut265 ± 114 of 4 0.59Down
Larval tubule434 ± 184 of 4 1.00None
Larval hindgut509 ± 84 of 4 1.12None
Larval fat body298 ± 224 of 4 0.70Down
Larval trachea478 ± 194 of 4 1.06None
Larval carcass467 ± 244 of 4 1.03None
S2 cells (growing)421 ± 34 of 4 0.93None
Whole fly453 ± 294 of 4

Looking for CG14407-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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