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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14413-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S25 (mRpS25):

Annotation Number : CG14413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030572
Gbrowse : chrX:14476216-14476926 (-) // 100.0 //
Probeset : 1634823_at
Accessions : protein= NP_511153;, nucleotide= NM_078598;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0030572.
VDRC has 3 RNAi stocks for FBgn0030572 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain367 ± 44 of 4 2.40Up
Head163 ± 104 of 4 1.00None
Eye128 ± 84 of 4 0.82None
Thoracicoabdominal ganglion393 ± 164 of 4 2.50Up
Salivary gland132 ± 64 of 4 0.85None
Crop132 ± 34 of 4 0.80None
Midgut156 ± 84 of 4 1.00None
Tubule133 ± 44 of 4 0.90Down
Hindgut172 ± 64 of 4 1.10None
Heart104 ± 24 of 4 0.67Down
Fat body117 ± 164 of 4 0.75Down
Ovary231 ± 34 of 4 1.50Up
Testis57 ± 34 of 4 0.40Down
Male accessory glands144 ± 84 of 4 0.90None
Virgin spermatheca104 ± 84 of 4 0.67Down
Mated spermatheca120 ± 14 of 4 0.77Down
Adult carcass132 ± 144 of 4 0.80None
Larval CNS255 ± 84 of 4 1.64Up
Larval Salivary gland164 ± 84 of 4 1.05None
Larval midgut103 ± 84 of 4 0.66Down
Larval tubule107 ± 24 of 4 0.70Down
Larval hindgut187 ± 174 of 4 1.20None
Larval fat body51 ± 24 of 4 0.30Down
Larval trachea141 ± 234 of 4 0.91None
Larval carcass184 ± 284 of 4 1.18None
S2 cells (growing)176 ± 64 of 4 1.13None
Whole fly156 ± 84 of 4

Looking for CG14413-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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