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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14419-RA through 18771 annotations produced 1 hits



(CG14419):

Annotation Number : CG14419
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029639
Gbrowse : chrX:2779218-2779944 (-) // 99.32 //
Probeset : 1641307_at
Accessions : protein= NP_570034;, nucleotide= NM_130678;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029639.
BDGP gene expression has embryonic in situ data for CG14419: 28 pix of staining in 6 body parts.
BioGrid reports that CG14419 interacts with CG7658 .
TRiP has 1 RNAi stocks for FBgn0029639 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 02 of 4 0.10Down
Head936 ± 1134 of 413.90Up
Eye8 ± 11 of 4 0.12Down
Thoracicoabdominal ganglion4 ± 21 of 4 0.10Down
Salivary gland11 ± 21 of 4 0.17Down
Crop33 ± 14 of 4 0.50Down
Midgut10 ± 13 of 4 0.20Down
Tubule7 ± 02 of 4 0.10Down
Hindgut334 ± 204 of 4 5.00Up
Heart5 ± 01 of 4 0.08Down
Fat body6 ± 42 of 4 0.10Down
Ovary5 ± 12 of 4 0.10Down
Testis4 ± 12 of 4 0.10Down
Male accessory glands8 ± 21 of 4 0.10Down
Virgin spermatheca6 ± 11 of 4 0.09Down
Mated spermatheca4 ± 11 of 4 0.07Down
Adult carcass31 ± 44 of 4 0.50Down
Larval CNS6 ± 04 of 4 0.09Down
Larval Salivary gland11 ± 12 of 4 0.17Down
Larval midgut15 ± 13 of 4 0.23Down
Larval tubule5 ± 11 of 4 0.10Down
Larval hindgut1278 ± 1284 of 418.99Up
Larval fat body11 ± 10 of 4 0.20Down
Larval trachea12 ± 133 of 4 0.19Down
Larval carcass937 ± 1924 of 413.92Up
S2 cells (growing)95 ± 34 of 4 1.42Up
Whole fly67 ± 64 of 4

Looking for CG14419-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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