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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14420-RA through 18771 annotations produced 1 hits



(CG14420):

Annotation Number : CG14420
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029643
Gbrowse : chrX:2832888-2834574 (+) // 100.0 //
Probeset : 1629224_at
Accessions : protein= NP_570041;, nucleotide= NM_130685;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0004974 // leukotriene receptor activity // inferred from electronic annotation
FlyMine data for FBgn0029643.
TRiP has 1 RNAi stocks for FBgn0029643 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.90None
Head3 ± 10 of 4 1.00None
Eye0 ± 00 of 4 0.25None
Thoracicoabdominal ganglion3 ± 10 of 4 1.10None
Salivary gland7 ± 10 of 4 2.11None
Crop3 ± 10 of 4 1.00None
Midgut3 ± 10 of 4 1.10None
Tubule2 ± 00 of 4 0.70None
Hindgut1 ± 00 of 4 0.40None
Heart2 ± 10 of 4 0.58None
Fat body4 ± 20 of 4 1.30None
Ovary1 ± 00 of 4 0.50None
Testis3 ± 10 of 4 1.10None
Male accessory glands3 ± 20 of 4 1.10None
Virgin spermatheca2 ± 00 of 4 0.75None
Mated spermatheca2 ± 00 of 4 0.64None
Adult carcass4 ± 20 of 4 1.30None
Larval CNS2 ± 00 of 4 0.73None
Larval Salivary gland3 ± 10 of 4 0.90None
Larval midgut1 ± 00 of 4 0.49None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.57None
Larval fat body7 ± 20 of 4 2.10None
Larval trachea1 ± 00 of 4 0.31None
Larval carcass2 ± 00 of 4 0.84None
S2 cells (growing)1 ± 00 of 4 0.38None
Whole fly3 ± 20 of 4

Looking for CG14420-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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