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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14436-RA through 18771 annotations produced 1 hits



C3G (C3G):

Annotation Number : CG14436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259228
Gbrowse : chrX:6693813-6694284 (-) // 100.0 //
Probeset : 1640369_at
Accessions : protein= NP_001138166; /// NP_001138167; /// NP_001138168; /// NP_001138169; /// NP_572350; /// NP_788867;, nucleotide= NM_001144694; /// NM_001144695; /// NM_001144696; /// NM_001144697; /// NM_132122; /// NM_176694;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-n
FlyMine data for FBgn0259228.
BioGrid reports that CG14436 interacts with CG8540 .
TRiP has 1 RNAi stocks for FBgn0259228 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 00 of 4 0.70None
Eye1 ± 00 of 4 0.60None
Thoracicoabdominal ganglion4 ± 10 of 4 1.40None
Salivary gland17 ± 30 of 4 6.12Up
Crop5 ± 20 of 4 1.70None
Midgut5 ± 10 of 4 1.90None
Tubule3 ± 00 of 4 1.10None
Hindgut4 ± 20 of 4 1.50None
Heart1 ± 00 of 4 0.37None
Fat body3 ± 30 of 4 1.31None
Ovary1 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.40None
Male accessory glands4 ± 20 of 4 1.50None
Virgin spermatheca1 ± 00 of 4 0.55None
Mated spermatheca5 ± 10 of 4 1.91None
Adult carcass8 ± 30 of 4 2.90None
Larval CNS3 ± 30 of 4 1.03None
Larval Salivary gland2 ± 00 of 4 0.90None
Larval midgut4 ± 00 of 4 1.36None
Larval tubule4 ± 10 of 4 1.50None
Larval hindgut3 ± 10 of 4 1.05None
Larval fat body11 ± 50 of 4 3.90None
Larval trachea2 ± 10 of 4 0.98None
Larval carcass5 ± 00 of 4 1.89None
S2 cells (growing)2 ± 00 of 4 0.85None
Whole fly2 ± 10 of 4

Looking for CG14436-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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