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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14438-RA through 18771 annotations produced 1 hits



(CG14438):

Annotation Number : CG14438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029899
Gbrowse : chrX:6650354-6664330 (+) // 100.0 //
Probeset : 1623386_s_at
Accessions : protein= NP_572348; /// NP_727123;, nucleotide= NM_132120; /// NM_167090;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0029899.
BDGP gene expression has embryonic in situ data for CG14438: 4 pix of staining in 1 body parts.
BioGrid reports that CG14438 interacts with CG6338 CG8614 CG17450 CG32819 CG32820 .
VDRC has 4 RNAi stocks for FBgn0029899 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 24 of 4 3.00Up
Head23 ± 54 of 4 0.80None
Eye29 ± 34 of 4 1.00None
Thoracicoabdominal ganglion40 ± 24 of 4 1.30None
Salivary gland36 ± 60 of 4 1.22None
Crop25 ± 33 of 4 0.80None
Midgut23 ± 12 of 4 0.80None
Tubule22 ± 14 of 4 0.70Down
Hindgut26 ± 04 of 4 0.90None
Heart18 ± 24 of 4 0.61None
Fat body20 ± 64 of 4 0.68None
Ovary80 ± 44 of 4 2.70Up
Testis10 ± 21 of 4 0.30Down
Male accessory glands30 ± 24 of 4 1.00None
Virgin spermatheca6 ± 10 of 4 0.20Down
Mated spermatheca10 ± 30 of 4 0.35Down
Adult carcass26 ± 40 of 4 0.90None
Larval CNS129 ± 184 of 4 4.31Up
Larval Salivary gland22 ± 21 of 4 0.76None
Larval midgut19 ± 04 of 4 0.64None
Larval tubule18 ± 03 of 4 0.60None
Larval hindgut26 ± 04 of 4 0.87None
Larval fat body4 ± 00 of 4 0.10Down
Larval trachea44 ± 24 of 4 1.48None
Larval carcass29 ± 24 of 4 1.00None
S2 cells (growing)113 ± 14 of 4 3.77Up
Whole fly30 ± 53 of 4

Looking for CG14438-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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