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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14439-RA through 18771 annotations produced 1 hits



(CG14439):

Annotation Number : CG14439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029898
Gbrowse : chrX:6641581-6649476 (+) // 100.0 //
Probeset : 1627293_at
Accessions : protein= NP_572347;, nucleotide= NM_132119;
FlyMine data for FBgn0029898.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.30Down
Head270 ± 424 of 4 4.50Up
Eye83 ± 74 of 4 1.38None
Thoracicoabdominal ganglion8 ± 20 of 4 0.10Down
Salivary gland22 ± 32 of 4 0.37Down
Crop71 ± 44 of 4 1.20None
Midgut44 ± 44 of 4 0.70None
Tubule3 ± 00 of 4 0.10Down
Hindgut42 ± 24 of 4 0.70None
Heart20 ± 44 of 4 0.35Down
Fat body9 ± 61 of 4 0.16Down
Ovary3 ± 10 of 4 0.00Down
Testis5 ± 02 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca10 ± 10 of 4 0.17Down
Mated spermatheca11 ± 12 of 4 0.19Down
Adult carcass491 ± 744 of 4 8.10Up
Larval CNS18 ± 54 of 4 0.30Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut19 ± 14 of 4 0.31Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut62 ± 74 of 4 1.03None
Larval fat body4 ± 21 of 4 0.10Down
Larval trachea28 ± 34 of 4 0.47Down
Larval carcass566 ± 854 of 4 9.37Up
S2 cells (growing)3 ± 10 of 4 0.06Down
Whole fly60 ± 94 of 4

Looking for CG14439-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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