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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1444-RA through 18771 annotations produced 1 hits



(CG1444):

Annotation Number : CG1444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029975
Gbrowse : chrX:7802924-7805918 (+) // 100.0 //
Probeset : 1635088_at
Accessions : protein= NP_572420;, nucleotide= NM_132192;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0029975.
BDGP gene expression has embryonic in situ data for CG1444: 43 pix of staining in 17 body parts.
Homophila reports that CG1444 is a close match (2e-50) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).
TRiP has 1 RNAi stocks for FBgn0029975 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain816 254 of 4 1.00None
Head542 264 of 4 0.70Down
Eye818 444 of 4 0.99None
Thoracicoabdominal ganglion933 234 of 4 1.10None
Salivary gland20 50 of 4 0.02Down
Crop3508 864 of 4 4.30Up
Midgut830 274 of 4 1.00None
Tubule136 174 of 4 0.20Down
Hindgut2703 284 of 4 3.30Up
Heart3776 2334 of 4 4.58Up
Fat body3030 2894 of 4 3.67Up
Ovary443 114 of 4 0.50Down
Testis170 134 of 4 0.20Down
Male accessory glands212 94 of 4 0.30Down
Virgin spermatheca386 144 of 4 0.47Down
Mated spermatheca274 194 of 4 0.33Down
Adult carcass3118 464 of 4 3.80Up
Larval CNS393 554 of 4 0.48Down
Larval Salivary gland32 34 of 4 0.04Down
Larval midgut395 212 of 4 0.48Down
Larval tubule85 84 of 4 0.10Down
Larval hindgut152 104 of 4 0.18Down
Larval fat body273 74 of 4 0.30Down
Larval trachea184 504 of 4 0.22Down
Larval carcass176 124 of 4 0.21Down
S2 cells (growing)793 214 of 4 0.96None
Whole fly825 474 of 4

Looking for CG1444-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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