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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14442-RA through 18771 annotations produced 1 hits



(CG14442):

Annotation Number : CG14442
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029893
Gbrowse : chrX:6583220-6589015 (-) // 100.0 //
Probeset : 1628324_at
Accessions : protein= NP_001162681; /// NP_572342;, nucleotide= NM_001169210; /// NM_132114;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0029893.
BioGrid reports that CG14442 interacts with CG1454 CG15218 CG15666 CG4168 CG5026 CG6353 CG7238 .
VDRC has 2 RNAi stocks for FBgn0029893 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain304 ± 54 of 4 2.70Up
Head110 ± 114 of 4 1.00None
Eye250 ± 74 of 4 2.22Up
Thoracicoabdominal ganglion177 ± 184 of 4 1.60Up
Salivary gland129 ± 84 of 4 1.15None
Crop86 ± 44 of 4 0.80None
Midgut66 ± 54 of 4 0.60Down
Tubule167 ± 54 of 4 1.50Up
Hindgut108 ± 74 of 4 1.00None
Heart137 ± 54 of 4 1.22None
Fat body98 ± 164 of 4 0.87None
Ovary385 ± 64 of 4 3.40Up
Testis15 ± 14 of 4 0.10Down
Male accessory glands83 ± 74 of 4 0.70None
Virgin spermatheca179 ± 94 of 4 1.59Up
Mated spermatheca193 ± 104 of 4 1.71Up
Adult carcass54 ± 74 of 4 0.50Down
Larval CNS333 ± 114 of 4 2.96Up
Larval Salivary gland117 ± 84 of 4 1.05None
Larval midgut65 ± 14 of 4 0.58Down
Larval tubule67 ± 14 of 4 0.60Down
Larval hindgut118 ± 24 of 4 1.05None
Larval fat body42 ± 54 of 4 0.40Down
Larval trachea247 ± 174 of 4 2.19Up
Larval carcass112 ± 94 of 4 1.00None
S2 cells (growing)80 ± 34 of 4 0.72None
Whole fly112 ± 114 of 4

Looking for CG14442-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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