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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14443-RA through 18771 annotations produced 1 hits



(CG14443):

Annotation Number : CG14443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029880
Gbrowse : chrX:6528885-6530202 (+) // 100.0 //
Probeset : 1641583_at
Accessions : protein= NP_572330;, nucleotide= NM_132102;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0029880.
BioGrid reports that CG14443 interacts with CG14837 CG9715 CG15729 CG3365 .
TRiP has 1 RNAi stocks for FBgn0029880 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029880 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.20None
Head0 ± 00 of 4 0.30None
Eye3 ± 10 of 4 1.43None
Thoracicoabdominal ganglion4 ± 10 of 4 2.00None
Salivary gland1 ± 00 of 4 0.46None
Crop4 ± 10 of 4 1.70None
Midgut7 ± 10 of 4 2.90None
Tubule3 ± 10 of 4 1.30None
Hindgut0 ± 00 of 4 0.30None
Heart2 ± 10 of 4 0.96None
Fat body4 ± 40 of 4 1.97None
Ovary1 ± 00 of 4 0.60None
Testis20 ± 14 of 4 8.60Up
Male accessory glands5 ± 10 of 4 2.10None
Virgin spermatheca2 ± 00 of 4 0.81None
Mated spermatheca4 ± 10 of 4 2.04None
Adult carcass6 ± 20 of 4 2.80None
Larval CNS4 ± 10 of 4 2.01None
Larval Salivary gland4 ± 10 of 4 1.97None
Larval midgut4 ± 00 of 4 1.93None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut2 ± 00 of 4 0.98None
Larval fat body6 ± 20 of 4 2.70None
Larval trachea4 ± 21 of 4 1.88None
Larval carcass1 ± 00 of 4 0.76None
S2 cells (growing)15 ± 13 of 4 6.48Up
Whole fly2 ± 00 of 4

Looking for CG14443-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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