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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14472-RA through 18771 annotations produced 1 hits



pushover (poe):

Annotation Number : CG14472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011230
Gbrowse : chr2L:8054321-8071591 (-) // 100.0 //
Probeset : 1634654_at
Accessions : protein= NP_476986;, nucleotide= NM_057638;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005516 // calmodulin binding //
FlyMine data for FBgn0011230.
BioGrid reports that CG14472 interacts with CG8318 CG15444 .
TRiP has 1 RNAi stocks for FBgn0011230 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain585 114 of 4 1.30Up
Head450 194 of 4 1.00None
Eye440 234 of 4 1.00None
Thoracicoabdominal ganglion562 214 of 4 1.30Up
Salivary gland670 404 of 4 1.52Up
Crop817 274 of 4 1.90Up
Midgut386 64 of 4 0.90None
Tubule677 84 of 4 1.50Up
Hindgut738 104 of 4 1.70Up
Heart664 184 of 4 1.51Up
Fat body635 504 of 4 1.44Up
Ovary540 234 of 4 1.20Up
Testis809 114 of 4 1.80Up
Male accessory glands771 244 of 4 1.70Up
Virgin spermatheca579 194 of 4 1.31Up
Mated spermatheca559 194 of 4 1.27Up
Adult carcass661 204 of 4 1.50Up
Larval CNS663 384 of 4 1.50Up
Larval Salivary gland663 344 of 4 1.51Up
Larval midgut442 364 of 4 1.00None
Larval tubule1178 184 of 4 2.70Up
Larval hindgut764 334 of 4 1.73Up
Larval fat body466 494 of 4 1.10None
Larval trachea594 134 of 4 1.35Up
Larval carcass872 874 of 4 1.98Up
S2 cells (growing)635 104 of 4 1.44Up
Whole fly441 224 of 4

Looking for CG14472-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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