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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14502-RA through 18771 annotations produced 1 hits


(CG14502):

Annotation Number : CG14502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034321
Gbrowse : chr2R:14176725-14182217 (+) // 100.0 //
Probeset : 1639638_a_at
Accessions : protein= NP_001163192; /// NP_611311; /// NP_725766;, nucleotide= NM_001169721; /// NM_137467; /// NM_166276;
FlyMine data for FBgn0034321.
BDGP gene expression has embryonic in situ data for CG14502: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye4 ± 11 of 4 0.10Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.05Down
Crop3 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.04Down
Fat body6 ± 33 of 4 0.16Down
Ovary7 ± 04 of 4 0.20Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.12Down
Mated spermatheca4 ± 12 of 4 0.10Down
Adult carcass192 ± 134 of 4 4.40Up
Larval CNS2 ± 10 of 4 0.06Down
Larval Salivary gland1 ± 10 of 4 0.03Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.07Down
Larval fat body4 ± 20 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly44 ± 34 of 4

Looking for CG14502-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime