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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14508-RA through 18771 annotations produced 1 hits



chr3R:25028386-25029855 (-) // 100.0 // ("Ubiquinol-cytochrome c reductase Cytochrome C1):

Annotation Number : CG14508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624296_at
Accessions : protein= , nucleotide=
Interpro : "0006119 // oxidative phosphorylation // inferred from sequence or structural similarity /// 0006122 // mitochondrial el
BioGrid reports that CG14508 interacts with CG6197 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 0.10Down
Head10 ± 13 of 4 0.10Down
Eye12 ± 14 of 4 0.17Down
Thoracicoabdominal ganglion9 ± 13 of 4 0.10Down
Salivary gland23 ± 11 of 4 0.31Down
Crop8 ± 22 of 4 0.10Down
Midgut23 ± 22 of 4 0.30Down
Tubule7 ± 11 of 4 0.10Down
Hindgut11 ± 14 of 4 0.20Down
Heart6 ± 22 of 4 0.09Down
Fat body17 ± 34 of 4 0.24Down
Ovary9 ± 23 of 4 0.10Down
Testis758 ± 244 of 410.40Up
Male accessory glands11 ± 21 of 4 0.20Down
Virgin spermatheca12 ± 24 of 4 0.17Down
Mated spermatheca11 ± 13 of 4 0.16Down
Adult carcass20 ± 14 of 4 0.30Down
Larval CNS10 ± 23 of 4 0.14Down
Larval Salivary gland16 ± 23 of 4 0.22Down
Larval midgut28 ± 44 of 4 0.38Down
Larval tubule12 ± 12 of 4 0.20Down
Larval hindgut11 ± 04 of 4 0.15Down
Larval fat body161 ± 704 of 4 2.20None
Larval trachea11 ± 61 of 4 0.15Down
Larval carcass9 ± 20 of 4 0.13Down
S2 cells (growing)15 ± 13 of 4 0.21Down
Whole fly73 ± 54 of 4

Looking for CG14508-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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